PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_9A4A7514E.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 629aa    MW: 71775.6 Da    PI: 8.2437
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_9A4A7514E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.31.1e-1711104290
                   FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 
                             Y+ +Ak++GFs+r+++++ +    +  t+r fvC + g++  +  +   k++r+r+++r+gC+a l++ ++      +w+vt +++ 
  Traes_2AL_9A4A7514E.1  11 LYSGFAKQCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPAKPFDdGAKQQRNRKSSRCGCQAYLRIGRDAgagGLEWRVTGFSNY 98 
                            79************9998877356667999*********998887664678899*****************99877789********* PP

                   FAR1  85 HnHela 90 
                            HnHel 
  Traes_2AL_9A4A7514E.1  99 HNHELL 104
                            ****96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1511104IPR004330FAR1 DNA binding domain
PfamPF105515.4E-16227313IPR018289MULE transposase domain
PROSITE profilePS509669.977503539IPR007527Zinc finger, SWIM-type
PfamPF044344.0E-8511538IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6514541IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
RFLTHEAAYE LYSGFAKQCG FSIRRHRTEG KDGVGKGLTR RYFVCHRAGN TPAKPFDDGA  60
KQQRNRKSSR CGCQAYLRIG RDAGAGGLEW RVTGFSNYHN HELLRQDEVR FLPAYRVISE  120
SDRDRILVFA KSGITVQQMM RIMELEKCVQ PGSLPFTEKD VRNLIQSFRR FEQEEESVDL  180
LQMCRNVKEK DPNFKYDFTK DANNCVENIA WSYASSIQSY EVFGDAVVFD TTHRLTSIDM  240
TLGIWIGMNN HGMPCFFSCV LLREGNLQSF TWALQVFLNF MNRKAPQTIL TDQNMYLKEA  300
VQKELPNTKH ALSIGLIASR FLSWFNAVLG RHYNDWENEF YRLHNMESTM DFDLGWSDMV  360
SCYGLHGNRH IASLFASRKL WASPYLRGHF LAGLAALPGI SKIKDFIQRL LSAQTCLSCF  420
IEQVAVVVDY KDQAGEQQIV QQNSENTILK TAAPVEGHAA AVFTPYAFYK LQDELVEAAH  480
YAYFHLEGNA FLVRHHTKTD GGCNVTWNQK EELLSCSCQM FESSGILCRH ALRVLTTLNY  540
SQIPDHYLPV RWHRTQPQPS KSLIGAPDHG RSYERVKALQ SMVSVLVSEA GKSEERMDLA  600
TQEVSVLLSR IRQQPVVANV SGDGVRQQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2487600.0AK248760.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf2n05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581280.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
RefseqXP_010239957.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLW5AV740.0W5AV74_WHEAT; Uncharacterized protein
STRINGMLOC_15705.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151711516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]